PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000150467
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 461aa    MW: 51167.8 Da    PI: 4.9073
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000150467genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.73e-2679151171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    r ++sL+llt+kf++l++++e+gi++ln++a++L  e     +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  MDP0000150467  79 RFDSSLGLLTKKFINLIKHAEDGILDLNKAADTL--EvttflSV-VQKRRIYDITNVLEGIGLIEKKLKNRIQWKG 151
                    6789******************************..66799955.5****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-2777153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-3279151IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-1579149IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.9E-2381151IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF164217.9E-23160249IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF1440741.33E-24163251No hitNo description
CDDcd146601.13E-36166251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLKRKSDAVD CEAESSDRTT APGYTDVGNS PLQTPMSTKV GKANKTSRLT KCSKSGPXTP  60
ASNVGSPSGA NVTPAGPCRF DSSLGLLTKK FINLIKHAED GILDLNKAAD TLEVTTFLSV  120
VQKRRIYDIT NVLEGIGLIE KKLKNRIQWK GLDVSRTGDV DENYPSLQAQ VENLSIEEXR  180
LDQQIRWLFV TEEDIKGLPC LQNETLIAIK APHGTTLEVP DPDEAVDYPQ RRYRMVLRST  240
MGPIDVYLVS QFEEKFEEIN GVEVPTNIAA TSGANENPAT TMVSEDRGKD VELQVPDDHT  300
MSADPTAAQD LTGGIMKIVP SDVDSDADYW LLSDADISIT DLWRXEHAGM FWEPVMSNHL  360
PYLFDLGGWV EGSGSCPSVP GKTHRRHKEQ RNESNQQAFV GVTGVKAGYR RIENVSMVVR  420
PHNHLVMFSI TLYAELELLX FRIPNYFMTV RFEGYSPLLS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-2674152274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361438.10.0PREDICTED: transcription factor E2FB-like isoform X1
SwissprotQ9FV711e-122E2FB_ARATH; Transcription factor E2FB
TrEMBLM5WJS30.0M5WJS3_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_06s0080g01110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-124E2F transcription factor 1